Our paper on target enrichment and high-throughput sequencing was publish today! 🙂
We developed a method to amplify multiple loci using microfluidic PCR from both the chloroplast and nuclear genome. The enriched loci can then be sequenced using a high-throughput sequencing platform, in our case Illumina. The paper also includes a pipeline to process the raw reads, recover alleles, and asses ploidy levels of the samples—exciting!
Check it out here: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0148203